chore: update crates.io publish plan and fix dependencies

- Update CRATES_PUBLISH_PLAN.md with Level 0-2 completion status
- Fix binary-merkle-tree and related dependencies
- Add runtime_logger_tests.rs
- Update various Cargo.toml files

bizinikiwi/primitives/runtime-interface/Cargo.toml

@@ -32,9 +32,6 @@ static_assertions = { workspace = true, default-features = true }
 polkavm-derive = { workspace = true }
 
 [dev-dependencies]
-pezsp-io = { workspace = true, default-features = true }
-pezsp-runtime-interface-test-wasm = { workspace = true }
-pezsp-state-machine = { workspace = true, default-features = true }
 rustversion = { workspace = true }
 trybuild = { workspace = true }
 
@@ -44,9 +41,6 @@ std = [
 	"bytes/std",
 	"codec/std",
 	"pezsp-externalities/std",
-	"pezsp-io/std",
-	"pezsp-runtime-interface-test-wasm/std",
-	"pezsp-state-machine/std",
 	"pezsp-std/std",
 	"pezsp-storage/std",
 	"pezsp-tracing/std",
@@ -60,7 +54,4 @@ std = [
 # Disables static assertions in `impls.rs` that checks the word size. To prevent any footgun, the
 # check is changed into a runtime check.
 disable_target_static_assertions = []
-runtime-benchmarks = [
-	"pezsp-io/runtime-benchmarks",
-	"pezsp-state-machine/runtime-benchmarks",
-]
+runtime-benchmarks = []