chore: update crates.io publish plan and fix dependencies

- Update CRATES_PUBLISH_PLAN.md with Level 0-2 completion status
- Fix binary-merkle-tree and related dependencies
- Add runtime_logger_tests.rs
- Update various Cargo.toml files

bizinikiwi/primitives/trie/Cargo.toml

@@ -31,7 +31,6 @@ nohash-hasher = { optional = true, workspace = true }
 parking_lot = { optional = true, workspace = true, default-features = true }
 pezsp-core = { workspace = true }
 pezsp-externalities = { workspace = true }
-prometheus-endpoint = { optional = true, workspace = true, default-features = true }
 rand = { optional = true, workspace = true, default-features = true }
 scale-info = { features = ["derive"], workspace = true }
 schnellru = { optional = true, workspace = true }
@@ -43,7 +42,7 @@ trie-root = { workspace = true }
 [dev-dependencies]
 array-bytes = { workspace = true, default-features = true }
 criterion = { workspace = true, default-features = true }
-pezsp-runtime = { workspace = true, default-features = true }
+pezsp-core = { workspace = true, default-features = true }
 trie-bench = { workspace = true }
 trie-standardmap = { workspace = true }
 
@@ -59,8 +58,6 @@ std = [
 	"parking_lot",
 	"pezsp-core/std",
 	"pezsp-externalities/std",
-	"pezsp-runtime/std",
-	"prometheus-endpoint",
 	"rand",
 	"scale-info/std",
 	"schnellru",
@@ -69,4 +66,4 @@ std = [
 	"trie-db/std",
 	"trie-root/std",
 ]
-runtime-benchmarks = ["pezsp-runtime/runtime-benchmarks"]
+runtime-benchmarks = []