* Rework cli handling
* Update readme
* Adds support for custom subcommands and extra run parameters
* Update readme
* Fixes compilation after master merge
* Make "Run" the default subcommand
Actually its hidden to the outside that is an subcommand.
* Rewrite CLI to work without breaking old CLI behavior
* Some cleanup
* Fix incorrect config setup
* Update README
* Fixes after merge
* Fixes incorrect README